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Forum: Bioinformatics 10-27-2009, 07:22 AM
Replies: 236
Views: 587,058
Posted By greggrant
Those options won't find things that map across...

Those options won't find things that map across exon/exon junctions. I need something that can map ungapped to the transcriptome, probably BLAST will do the trick, bu there should be something...
Forum: Bioinformatics 10-27-2009, 05:12 AM
Replies: 236
Views: 587,058
Posted By greggrant
Thanks for this list, that's really awesome. ...

Thanks for this list, that's really awesome. What do people think is the best way at this point to map approximately 5 million 100 bp reads to a transcriptome? I'm looking for alignment allowing (a...
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