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Forum: General 06-03-2020, 12:10 PM
Replies: 0
Views: 2,801
Posted By maxbio
Converting DIAMOND output to fasta format

Hello all,

I am trying to convert a DIAMOND output from a reference genome into a fasta file so I can use it as a database for subsequent DIAMOND annotations. Currently, the file is in .txt format...
Forum: Bioinformatics 06-28-2019, 12:51 PM
Replies: 0
Views: 1,189
Posted By maxbio
Parsing HMMER Reads in Biopython

Hello all,

I have obtained HMMER reads on 60 metatranscriptomic sequences, against Pfam, dbCAN2, and MEROPS databases. I ran the protein sequences through hmmsearch and now want to parse them for...
Forum: Bioinformatics 06-05-2019, 08:10 AM
Replies: 1
Views: 2,150
Posted By maxbio
Calling BBMerge from Java program


I have a handful of metatranscriptome sequences that I would like to merge using BBMerge, and I've sorted them together into bidimensional file arrays using a java program using code like...
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