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Forum: Bioinformatics 06-02-2012, 09:22 AM
Replies: 1
Views: 1,744
Posted By paula123
entamoeba histolytica reference genome (gene annotation file) in GTF format

Hi,
I am working with Entamoeba data. I have downloaded the genome data of entamoeba from NCBI in genebank format but did not get in GTF format. I have searched it in UCSC genome browser but...
Forum: Bioinformatics 05-30-2012, 09:04 AM
Replies: 8
Views: 10,736
Posted By paula123
Genome file of Entamoeba in GTF format

Hi,
I am working with entamoeba histolytica data. I need entamoeba histolytica reference genome data in GTF format. I got the file in genebank format but unable to find out in GTF format. If any...
Forum: Ion Torrent 05-08-2012, 11:02 PM
Replies: 1
Views: 2,369
Posted By paula123
TMAP alignment statistics

Hi,
I am using TMAP to align transcriptome data, sequenced by Ion-torrent. It is generated output file in sam format. How can I get how much read aligned and other basic required alignment...
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