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Search: Posts Made By: AndreaIzq
Forum: Bioinformatics 07-04-2013, 01:57 AM
Replies: 5
Views: 1,182
Posted By AndreaIzq
That's a ChIP-Seq experiment. I wil try to do it...

That's a ChIP-Seq experiment. I wil try to do it with the average coverage as you suggested, if the results are not correct I will try RPKM then.

Thanks.
Forum: Bioinformatics 07-03-2013, 07:20 AM
Replies: 5
Views: 1,182
Posted By AndreaIzq
Thanks Heisman for your reply. What I exactly...

Thanks Heisman for your reply.
What I exactly want is to plot the average coverage of my proteins in several regions (bed file). In the y axis, the average coverage and in the x axis, the width of...
Forum: Bioinformatics 07-03-2013, 03:08 AM
Replies: 5
Views: 1,182
Posted By AndreaIzq
Get coverage value in given regions

Hello,
I am trying to get the normalized coverage value in some given regions (bed file) but I don't succeded. Is there any easy way to do so? I am quite new in bioinformatics, sorry for asking...
Forum: Bioinformatics 07-01-2013, 02:16 AM
Replies: 0
Views: 950
Posted By AndreaIzq
Repeats in ChIPSeq reads

I would like to know if there is an enrichement in repeats in my ChIP-Seq data. I would like to have an histogram of the class of repeats enriched in my ChIP data.
I have downloaded the Repbase but,...
Forum: Bioinformatics 06-20-2013, 07:42 AM
Replies: 1
Views: 1,255
Posted By AndreaIzq
Coverage in given regions

Hello,
I'm trying to plot the coverage (bedgraph) in certain regions (bed). Is there an easy way to do so in R?

Thanks in advance,

Andrea
PhD student
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