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Forum: Bioinformatics 11-26-2013, 02:46 AM
Replies: 7
Views: 7,914
Posted By dpryan
Yeah, you can more easily ask the authors on the...

Yeah, you can more easily ask the authors on the list :) If you're just interested in the normal vs. post-inversion comparison (rather than also looking at whatever that "Sycon2" thing is), then yes,...
Forum: Bioinformatics 11-25-2013, 06:17 AM
Replies: 7
Views: 7,914
Posted By dpryan
If you input FPKMs into DESeq2 you'll get...

If you input FPKMs into DESeq2 you'll get unreliable results, since you're violating the statistical premise. You can probably use voom() to get things ready for analysis in limma. That's what I'd...
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