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Search: Posts Made By: r-waples
Forum: Bioinformatics 09-24-2012, 08:38 AM
Replies: 1
Views: 1,719
Posted By r-waples
Try pysam

I dealt with a similar issue, and the solution I came to was to use pysam (python module) to parse SAM/BAM files directly, rather than trying to make sense of mpileup files after the fact. Pysam...
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