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Forum: General 09-12-2019, 08:11 AM
Replies: 14
Views: 1,162
Posted By SNPsaurus
You should do the entire command as Genomax...

You should do the entire command as Genomax listed (with a change, I think, I'll mention below):

for i in *.bam; do reformat.sh in=${i}.bam out=${i}.fa; done

The first part (for i in *.bam)...
Forum: General 09-11-2019, 10:58 AM
Replies: 14
Views: 1,162
Posted By SNPsaurus
Can you copy what you did as a command and paste...

Can you copy what you did as a command and paste it here, and then list the directory as well and paste a few filenames as well? It looks like it didn't find any bam files. Are there files ending in...
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