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Forum: Bioinformatics 02-18-2013, 01:54 AM
Replies: 5
Views: 5,304
Posted By Jetse
Does the command ls -l...

Does the command ls -l /st_Users/Homo_sapiens/UCSC/hg19/Sequence/BowtieIndex/genome*.ebwt return all 6 ebwt files you downloaded?
Forum: Bioinformatics 12-06-2012, 06:03 AM
Replies: 5
Views: 5,304
Posted By Jetse
Solved the problem... When you have the same...

Solved the problem...

When you have the same problem, check your arguments on containing a bowtie index...
Forum: Bioinformatics 12-06-2012, 05:54 AM
Replies: 5
Views: 5,304
Posted By Jetse
Thumbs down Tophat problem - IndexError: list index out of range

Hello everyone,

I have a question about tophat like a lot of other people. But this error I couldn't find anywhere on this forum. I'm trying to execute tophat with this command:...
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