Forum: Bioinformatics
08-17-2015, 07:06 AM
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Replies: 1
Views: 604
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Forum: Bioinformatics
03-23-2015, 06:36 AM
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Replies: 0
Views: 827
antimicrobial resistance frequencies database
Hi there,
does anyone know where I can download a parseable database which contains antibiotic resistance frequencies?
I found this database http://arpcard.mcmaster.ca/ , but this only...
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Forum: Bioinformatics
03-12-2015, 06:48 AM
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Replies: 3
Views: 1,301
Hi,
AFAIK fishers exact test tries to answer...
Hi,
AFAIK fishers exact test tries to answer for independence between the two variables. First, I don't think this is what you want to test for (am I right?). Second, i think your groups are not...
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Forum: Bioinformatics
03-06-2015, 01:42 AM
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Replies: 5
Views: 2,818
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Forum: Bioinformatics
09-11-2014, 01:32 AM
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Replies: 42
Views: 6,612
That you can't use more cores might have...
That you can't use more cores might have something to do with the setup of your virtual machine. If you only hand through one core, it is obvious that you can't work with 8.... Check on that if you...
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Forum: Bioinformatics
08-27-2014, 07:40 AM
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Replies: 4
Views: 1,636
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Forum: Bioinformatics
07-15-2014, 02:30 AM
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Replies: 0
Views: 2,078
rarefaction curves and simulation
Hiho
i want to create a rarefaction curve using R i.e. vegan {rearecurve/speccaccum}.
This worked out quite well (please see here (http://imgur.com/7gPo7gv))
Anyways, as you can see in the...
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Forum: Bioinformatics
07-15-2014, 12:26 AM
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Replies: 4
Views: 1,712
from bowtie manual:
Alignment summmary
...
from bowtie manual:
Alignment summmary
When Bowtie 2 finishes running, it prints messages summarizing what happened. These messages are printed to the "standard error" ("stderr") filehandle. For...
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Forum: Bioinformatics
07-04-2014, 02:46 AM
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Replies: 2
Views: 1,230
check out mira...
check out mira (http://mira-assembler.sourceforge.net/) , or maybe mauve (http://gel.ahabs.wisc.edu/mauve/)
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Forum: Bioinformatics
05-06-2014, 01:08 AM
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Replies: 2
Views: 1,559
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Forum: Bioinformatics
04-22-2014, 11:24 PM
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Replies: 6
Views: 3,013
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Forum: Bioinformatics
04-01-2014, 09:36 AM
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Replies: 9
Views: 4,616
I acutally don't see any problem with that....
I acutally don't see any problem with that. However, I actually have no clue how much sequence similarity there is between those MT-Genomes. But anyways I would definitely give it a try!!!
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Forum: Bioinformatics
04-01-2014, 02:13 AM
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Replies: 2
Views: 1,870
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Forum: Bioinformatics
04-01-2014, 02:08 AM
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Replies: 7
Views: 2,017
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Forum: Bioinformatics
04-01-2014, 02:06 AM
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Replies: 9
Views: 4,616
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Forum: Bioinformatics
04-01-2014, 02:01 AM
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Replies: 8
Views: 1,870
what do you mean by "compare"? I doubt that...
what do you mean by "compare"? I doubt that mappers like BWA.. are capable of doing this. They are desinged to work with short sequences, <120bp, so they won't compare sequences of, approx. 1kb, very...
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Forum: Bioinformatics
04-01-2014, 01:56 AM
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Replies: 2
Views: 998
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Forum: Bioinformatics
03-21-2014, 07:09 AM
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Replies: 6
Views: 2,769
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Forum: Metagenomics
03-13-2014, 08:17 AM
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Replies: 1
Views: 1,379
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Forum: Metagenomics
03-13-2014, 08:15 AM
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Replies: 2
Views: 3,174
have a look at the program FLASH...
have a look at the program FLASH (http://ccb.jhu.edu/software/FLASH/), it might help! It does good work and especially for your task, try to use it after your first initial assembly...
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Forum: Bioinformatics
02-10-2014, 06:50 AM
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Replies: 5
Views: 1,678
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Forum: Bioinformatics
02-10-2014, 06:43 AM
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Replies: 5
Views: 1,479
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Forum: Bioinformatics
02-10-2014, 06:42 AM
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Replies: 3
Views: 1,603
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Forum: Bioinformatics
02-06-2014, 04:03 AM
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Replies: 16
Views: 7,085
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Forum: Bioinformatics
02-06-2014, 03:05 AM
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Replies: 16
Views: 7,085
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