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Forum: Bioinformatics 05-27-2020, 07:54 AM
Replies: 2
Views: 988
Posted By fjkvfhjkgjkkhfdsd
Hi, For those who have a similar problem, I...

Hi,

For those who have a similar problem, I found a solution.
NCBI provides an API which does exactly that job: https://www.ncbi.nlm.nih.gov/research/pubtator/

Best Regards
Forum: Bioinformatics 05-26-2020, 04:12 PM
Replies: 2
Views: 988
Posted By fjkvfhjkgjkkhfdsd
Does especially a framework exist which was made...

Does especially a framework exist which was made for developers with no background in biology? I tried to do Named Entity Recognition for gene names. But I think it is a major problem to create a...
Forum: Bioinformatics 05-26-2020, 03:52 PM
Replies: 2
Views: 988
Posted By fjkvfhjkgjkkhfdsd
Framework for Gene Name Entity Recognition

Does a framework for gene name entity recognition exists?
Use case: Input a text from a publication and get all gene names from that text.
Many thanks and best regards.
Forum: Bioinformatics 05-26-2020, 10:43 AM
Replies: 4
Views: 914
Posted By fjkvfhjkgjkkhfdsd
Is it also possible to do the query as HTTP...

Is it also possible to do the query as HTTP request?
Many Thanks.
Forum: Bioinformatics 05-26-2020, 09:35 AM
Replies: 4
Views: 914
Posted By fjkvfhjkgjkkhfdsd
Example: Get all publications for Cdc45...

Example: Get all publications for Cdc45 (ENSMUSG00000000028)
Forum: Bioinformatics 05-26-2020, 09:12 AM
Replies: 4
Views: 914
Posted By fjkvfhjkgjkkhfdsd
Database containing links between PubMed-Publications and Gene Names

Does a database exist which contains links between PubMed-Publications and Gene Names? Use Case: I want to find all relevant PubMed-Publications (PubMed-Ids) for a specific Gene Name. Many thanks and...
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