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Forum: Vendor Forum 02-03-2011, 10:35 AM
Replies: 0
Views: 2,752
Posted By SoftGenetics
Ion Torrent Module added to NextGENe® software

February 3, 2011, State College PA SoftGenetics announced that it has added a new module to its NextGENe software, version 2.1 and above, that enables the software to process sequence outputs from...
Forum: Vendor Forum 01-06-2011, 12:37 PM
Replies: 0
Views: 5,821
Posted By SoftGenetics
Newest NextGENe® software version which includes Transcriptome, Forensic Analyzers no

January 6, 2011, State College PA SoftGenetics announced the latest release of NextGENe software. NextGENe software is a free standing, highly graphical and interactive Windows based program for the...
Forum: Bioinformatics 10-08-2010, 05:40 AM
Replies: 12
Views: 3,882
Posted By SoftGenetics
You may wish to test the aligner in NextGENe...

You may wish to test the aligner in NextGENe which also provides a high level of visualization and annotation.
Forum: Bioinformatics 08-19-2010, 04:59 AM
Replies: 33
Views: 16,863
Posted By SoftGenetics
You may wish to try the mapper in NextGEne it is...

You may wish to try the mapper in NextGEne it is especially robust for the detection of indels using a 3 step process...you can obtain a free time limited trial on the softgenetics web site.
Forum: Bioinformatics 07-29-2010, 11:46 AM
Replies: 6
Views: 4,056
Posted By SoftGenetics
You may wish to try a trial of NextGENe it...

You may wish to try a trial of NextGENe it provides good visualization and the RPKM values.
Forum: Bioinformatics 07-28-2010, 12:06 PM
Replies: 5
Views: 2,127
Posted By SoftGenetics
You might wish to try a trial of NextGene its...

You might wish to try a trial of NextGene its assembler is quite robust
Forum: Bioinformatics 07-23-2010, 08:05 AM
Replies: 12
Views: 3,882
Posted By SoftGenetics
NextGENe will do a great and easy job on this,...

NextGENe will do a great and easy job on this, also has a quality ranking, like Phred, for all found variants including indels
Forum: Bioinformatics 07-15-2010, 11:18 AM
Replies: 35
Views: 20,668
Posted By SoftGenetics
You may wish to try NextGENe's tool for this, it...

You may wish to try NextGENe's tool for this, it is quite robust.
Forum: Bioinformatics 07-14-2010, 07:34 AM
Replies: 8
Views: 5,171
Posted By SoftGenetics
We utilize a modified BWA in our NextGENe...

We utilize a modified BWA in our NextGENe software which adds a couple of additional steps to the BWA alignment, creating a much more robust alignment, addtionally, we utilize a fully annotated color...
Forum: Bioinformatics 07-14-2010, 06:27 AM
Replies: 8
Views: 5,171
Posted By SoftGenetics
You will loose a lot of information by converting...

You will loose a lot of information by converting the color space files to fasta, you would be better off aligning the solid reads to a color space reference

John
Forum: Vendor Forum 06-28-2010, 10:11 AM
Replies: 0
Views: 2,371
Posted By SoftGenetics
Post NextGENe® Software Version 2.0 now available.

June 28, 2010, State College PA SoftGenetics announces the availability of the newest version of its NextGENe software for the analysis of data from the Roche GS, Illumina® GA and Applied BioSystems...
Forum: Vendor Forum 04-29-2010, 10:55 AM
Replies: 0
Views: 2,932
Posted By SoftGenetics
Post Variant Comparison Tool added to NextGENe software

April 29, 2010, State College PA SoftGenetics announced the addition of a variant comparison tool to its NextGENe software. The new tool is a response to many user requests for a fast, easy to use...
Forum: Vendor Forum 04-15-2010, 07:54 AM
Replies: 0
Views: 5,894
Posted By SoftGenetics
Variant Confidence Scoring System added to NextGENe software

April 15, 2010, State College PA SoftGenetics announced the addition of a unique variant scoring system to its NextGENe software to assist researchers and clinicians utilizing Next Generation...
Forum: Vendor Forum 02-23-2010, 07:29 AM
Replies: 0
Views: 3,419
Posted By SoftGenetics
Post New merge function creates Sanger Quality Sequence from NGS paired end reads

February 23, 2010, State College PA announced the availability of a new unique function in its NextGENe software that provides Sanger quality sequence from short-reads from Next Generation Sequencing...
Forum: Vendor Forum 12-18-2009, 08:23 AM
Replies: 0
Views: 2,248
Posted By SoftGenetics
Enhanced version of NextGENe® software for 2nd generation sequence analysis just rele

December 18, 2009, State College PA SoftGenetics announced the availability of an enhanced version of its NextGENe software for the analysis of data produced by major next generation sequencing...
Forum: Vendor Forum 12-10-2009, 11:09 AM
Replies: 0
Views: 2,460
Posted By SoftGenetics
Post New low-cost Browser/Viewer now available for NextGENe software users

December 10, 2009, State College PA SoftGenetics announced the introduction of a low-cost Browser/Viewer to Next Generation Sequencing data previously processed by its NextGENe software. The viewer,...
Forum: Vendor Forum 12-04-2009, 05:59 AM
Replies: 0
Views: 2,047
Posted By SoftGenetics
Ambry Genetics and SoftGenetics Form Exclusive Alliance for Extended Bioinformatics S

Aliso Viejo, CA and State College, PA– December 3, 2009: Ambry
Genetics and SoftGenetics today announced the signing of an agreement to
provide extended bioinformatics genomics services using...
Forum: Vendor Forum 10-16-2009, 10:09 AM
Replies: 0
Views: 2,582
Posted By SoftGenetics
Metagenomic Studies of Viral and Bacterial Infections using 2nd Generation Pyrosequen

October 16, 2009, State College PA SoftGenetics LLC announced the capability of performing analysis and identification of genetic materials for Drug Efficacy Studies and infectious agents such as...
Forum: General 10-06-2009, 08:51 AM
Replies: 2
Views: 2,568
Posted By SoftGenetics
or our technical staff can work thru your...

or our technical staff can work thru your questions with you
Forum: General 10-06-2009, 06:06 AM
Replies: 2
Views: 2,568
Posted By SoftGenetics
Hi Ed, I can give you a user list to contact if...

Hi Ed, I can give you a user list to contact if you wish,,,jsut let me know.
best John
Forum: Bioinformatics 10-05-2009, 01:11 PM
Replies: 6
Views: 6,492
Posted By SoftGenetics
You could try NextGENe for your assemblies

You could try NextGENe for your assemblies
Forum: Vendor Forum 09-30-2009, 11:32 AM
Replies: 0
Views: 3,328
Posted By SoftGenetics
Structural Variant Detection of short and long reads with NextGENe® 2nd Generation S

September 30, 2009, State College PA SoftGenetics announced the new capability of whole genome structural variant detection in both short and long reads generated by 2nd generation systems such as...
Forum: Vendor Forum 09-10-2009, 02:19 PM
Replies: 3
Views: 4,830
Posted By SoftGenetics
go to our website and download it there: ...

go to our website and download it there: http://www.softgenetics.com/Evaluation_TargetedEnrichmentSequenceAnalysis_Paper.pdf
Forum: Vendor Forum 09-10-2009, 02:19 PM
Replies: 3
Views: 4,830
Posted By SoftGenetics
hi it would be easier for you to download from...

hi it would be easier for you to download from our website: http://www.softgenetics.com/Evaluation_TargetedEnrichmentSequenceAnalysis_Paper.pdf
Forum: Bioinformatics 09-03-2009, 11:25 AM
Replies: 4
Views: 1,840
Posted By SoftGenetics
NextGENe has a comparator for what you wish to do

NextGENe has a comparator for what you wish to do
Showing results 1 to 25 of 32

 


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