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Forum: Bioinformatics 04-11-2012, 06:56 AM
Replies: 1
Views: 4,340
Posted By hulan0@gmail.com
tophat2 segment_juncs error: Error: segment-based junction search failed with err =-6

Hi,

I am trying out the latest tophat2 on a small read file. My reference is the rabbit genome which has 3243 sequences (chromosomes + scaffolds).

segment_juncs.log has the following lines at...
Forum: Bioinformatics 02-25-2011, 12:31 PM
Replies: 1
Views: 3,287
Posted By hulan0@gmail.com
soap2 segmentation fault when loading index table

Hi all,

I try to use soap2 to align PE reads from HiSeq2000. Each read file is about 25GB. I have had very little luck with soap aligner.

I used 2twt-builder to build the index files first on...
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