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Forum: Bioinformatics 01-24-2014, 03:58 AM
Replies: 2
Views: 1,755
Posted By Mayflower
How to visualize GO term generated from Trinotate

Hi, I am quiet new to bioinformatics. I am working on a non-model fish which doesn't have a genome reference.

I use trinity to do the de novo transcriptome assembly and use the trinotate (a...
Forum: Bioinformatics 01-06-2014, 04:39 AM
Replies: 1
Views: 1,674
Posted By Mayflower
Cufflinks get stuck at a locus

Hi, guys

I am quite new for bioinformatics. Currently, I am running cufflinks, but one sample stuck at one locus for more than two weeks, while the another sample run successfully.

Here is the...
Forum: Bioinformatics 10-21-2013, 02:40 AM
Replies: 2
Views: 1,683
Posted By Mayflower
Hi, Thank you so much. I will try and let you...

Hi,
Thank you so much. I will try and let you know the results.
Forum: Bioinformatics 10-20-2013, 06:59 PM
Replies: 2
Views: 1,683
Posted By Mayflower
How to predicate miRNA target without a reference genome

Hi, guys

I am trying to predicate miRNA target from a fish species. I have sequenced small RNA and mRNA and then proceed to do the de novo assembly to get the transcriptome. There is no whole...
Forum: De novo discovery 10-20-2013, 06:58 PM
Replies: 0
Views: 1,499
Posted By Mayflower
How to predicate miRNA target without a reference genome

Hi, guys

I am trying to predicate miRNA target from a fish species. I have sequenced small RNA and mRNA and then proceed to do the de novo assembly to get the transcriptome. There is no whole...
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