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Forum: Bioinformatics 10-19-2011, 08:53 AM
Replies: 2
Views: 2,055
Posted By Ami
Hi Thanks for the advise, so I posted this...

Hi

Thanks for the advise, so I posted this in the galaxy support list and got a response from them.

Thank you

Amit
Forum: Bioinformatics 10-18-2011, 11:55 PM
Replies: 2
Views: 2,055
Posted By Ami
upload error in local instance of galaxy

Hi,

I have just installed a local instance of galaxy. Though I am not too familiar with unix, I preferred a local instance because of large amount of data I have to process. However, I am unable...
Forum: Bioinformatics 06-22-2011, 12:12 AM
Replies: 1
Views: 1,504
Posted By Ami
Help with finding complementary sequences in ngs data

Hello everybody,

I am analyzing ngs data for small RNAs (18-30nt). I need to find out sequences which show complementarity for first 5-20 nt (from their 5' or 3' ends). I understand there are a...
Forum: Bioinformatics 06-07-2011, 12:12 AM
Replies: 4
Views: 2,683
Posted By Ami
Thank you everybody for the help, I am trying the...

Thank you everybody for the help, I am trying the suggested options to find out which is easy for me.
Forum: Bioinformatics 06-01-2011, 08:55 AM
Replies: 4
Views: 2,683
Posted By Ami
Unhappy Help with plotting ngs (small RNA seq) data

Hello all,

I am new to ngs (an unfortunately to bioinfo as well) :confused:, I Recently sequenced small RNAs (21-29 nt) using Illunina platform. I aligned the reads on to genome using bowtie, and...
Forum: General 09-07-2010, 01:37 AM
Replies: 0
Views: 1,999
Posted By Ami
Help with standalone blast

Hi everyone,


I am new to stand alone blast and my problem is trivial. I'm aligning 24-29 reads on the specific regions of drosophila genome (mostly they show similarity to repetitive...
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