Forum: Bioinformatics
11-11-2015, 02:38 AM
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Replies: 1
Views: 1,177
deconseq error
Hi All,
On running deconseq i am getting error below
ERROR: Could not create tsv file
Can anyone tell me why i am getting this?
I could not find this issue in deconseq google forum.
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Forum: Bioinformatics
10-01-2015, 05:03 AM
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Replies: 4
Views: 2,515
Hi Again,
I have a question related to kmer...
Hi Again,
I have a question related to kmer optimization for meta-genomic assembler.
How is the kmer optimized? Since its not a single genome so how to decide which kmer to use.
Is there any...
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Forum: Bioinformatics
09-22-2015, 02:18 AM
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Replies: 4
Views: 2,515
Hi,
Thanks for the reply!
At the moment i was...
Hi,
Thanks for the reply!
At the moment i was trying with reference based assembly with MIRA. I read the manual and i believe providing strain parameter will align the reads to the references...
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Forum: Bioinformatics
08-05-2015, 02:48 AM
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Replies: 4
Views: 2,515
Metagenomics analysis steps
Dear All
I am currently working on shotgun metagenomics data. I must tell i am very new to this work.
I have PE with 100 bp length from Illumina platform.
My aim in to find the functional...
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Forum: General
06-26-2015, 03:01 AM
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Replies: 0
Views: 1,057
PC Axis?
Dear All,
I have 16s data and have some queries regarding the same.
I am doing PCoA analysis and Axis 1 and 2 are not showing a separation of sample based on specific factor, so i plotted to axis...
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Forum: Illumina/Solexa
04-02-2014, 06:51 AM
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Replies: 0
Views: 1,124
Species specific primers
Hi All,
I need to design primer of one specific group of bacteria. For this i took all the sequences from that group and then did Multiple sequence alignment to find conserved region but these...
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Forum: Metagenomics
06-11-2013, 06:36 AM
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Replies: 1
Views: 2,133
Silva database
Dear SEQanswer,
I have list of accession numbers of sequences from one of the paper and I want to download those particular list from SILVA database. I tried but what I could do is search...
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Forum: RNA Sequencing
05-31-2013, 04:58 AM
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Replies: 47
Views: 46,385
RDA Analysis
I have few queries regarding the RDA analysis to discuss. Although I see clear difference in the bacterial community between the samples, I am not able to relate the OTU abundance table with...
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