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Forum: Bioinformatics 11-11-2015, 02:38 AM
Replies: 1
Views: 1,177
Posted By naman
deconseq error

Hi All,

On running deconseq i am getting error below
ERROR: Could not create tsv file
Can anyone tell me why i am getting this?
I could not find this issue in deconseq google forum.
Forum: Bioinformatics 10-01-2015, 05:03 AM
Replies: 4
Views: 2,515
Posted By naman
Hi Again, I have a question related to kmer...

Hi Again,
I have a question related to kmer optimization for meta-genomic assembler.
How is the kmer optimized? Since its not a single genome so how to decide which kmer to use.
Is there any...
Forum: Bioinformatics 09-22-2015, 02:18 AM
Replies: 4
Views: 2,515
Posted By naman
Hi, Thanks for the reply! At the moment i was...

Thanks for the reply!
At the moment i was trying with reference based assembly with MIRA. I read the manual and i believe providing strain parameter will align the reads to the references...
Forum: Bioinformatics 08-05-2015, 02:48 AM
Replies: 4
Views: 2,515
Posted By naman
Metagenomics analysis steps

Dear All

I am currently working on shotgun metagenomics data. I must tell i am very new to this work.

I have PE with 100 bp length from Illumina platform.

My aim in to find the functional...
Forum: General 06-26-2015, 03:01 AM
Replies: 0
Views: 1,057
Posted By naman
PC Axis?

Dear All,

I have 16s data and have some queries regarding the same.
I am doing PCoA analysis and Axis 1 and 2 are not showing a separation of sample based on specific factor, so i plotted to axis...
Forum: Illumina/Solexa 04-02-2014, 06:51 AM
Replies: 0
Views: 1,124
Posted By naman
Species specific primers

Hi All,

I need to design primer of one specific group of bacteria. For this i took all the sequences from that group and then did Multiple sequence alignment to find conserved region but these...
Forum: Metagenomics 06-11-2013, 06:36 AM
Replies: 1
Views: 2,133
Posted By naman
Silva database

Dear SEQanswer,

I have list of accession numbers of sequences from one of the paper and I want to download those particular list from SILVA database. I tried but what I could do is search...
Forum: RNA Sequencing 05-31-2013, 04:58 AM
Replies: 47
Views: 46,385
Posted By naman
RDA Analysis

I have few queries regarding the RDA analysis to discuss. Although I see clear difference in the bacterial community between the samples, I am not able to relate the OTU abundance table with...
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