Forum: Bioinformatics
12-13-2011, 11:42 AM
|
|
Replies: 0
Views: 1,482
microRNA -- alignment
Post allignment of microRNA and mapping against Mirbase I have a column ID with the precursor as well as the mature microRNA name, on parsing the column I have the list with the mature microRNA which...
|
|
Forum: Bioinformatics
11-09-2011, 05:22 AM
|
|
Replies: 0
Views: 1,436
A question on cisgenome
Dear All,
I am running cisgenome to identify known motif mapping of chipseq TF data on Windows GUI. Using one motif matrix and mm9 mouse Genome data base, If i run cisgenome for known motif...
|
|
Forum: Bioinformatics
10-18-2011, 05:00 AM
|
|
Replies: 1
Views: 1,412
cufflinks
Hi,
i'm getting Read type 0bp singled-end in the output of cufflinks, even it is 75bp. And, In the gene.fpkm/isoform file, it has lots of zero counts.
$ cufflinks -o /cufflinks/ -p 4 -g ...
|
|
Forum: Bioinformatics
10-17-2011, 12:30 PM
|
|
Replies: 3
Views: 1,400
|
|
Forum: Bioinformatics
10-17-2011, 06:09 AM
|
|
Replies: 3
Views: 1,400
noncoding RNAs
Hi,
how can i get how many transcripts map to rRNA genes, tRNA, snoRNA, microRNA, lincs ,etc, respectively? manually do i count them? is there any tool or package to do it?
any tips would be...
|
|
Forum: Bioinformatics
10-17-2011, 05:53 AM
|
|
Replies: 2
Views: 7,116
|
|
Forum: Bioinformatics
10-12-2011, 11:18 AM
|
|
Replies: 2
Views: 7,116
|
