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Forum: Bioinformatics 12-02-2010, 11:26 AM
Replies: 8
Views: 10,254
Posted By cog
Hi Menenuh, A part of the problem might be...

Hi Menenuh,

A part of the problem might be because I split by tags using SFFTools, before going into AVA. If I go back a step to my original file, and instead use AVA to identify the tags (by...
Forum: Bioinformatics 11-21-2010, 11:25 AM
Replies: 8
Views: 10,254
Posted By cog
Hi kmcarr, Thank you for your reply. You...

Hi kmcarr,

Thank you for your reply. You are right, the files have already been split by MID tags. I checked my project in AVA, and there were indeed MIDs defined by default. I removed these...
Forum: Bioinformatics 11-18-2010, 11:51 AM
Replies: 8
Views: 10,254
Posted By cog
Difficulty aligning to reference with AVA

Hi,

I'm using the Roche Amplicon Variant Analyzer software to align amplicon reads from GS Junior to a reference sequence. The reads have already been successfully manipulated (split by tags)...
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