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Search: Posts Made By: Niloofar
Forum: Bioinformatics 08-14-2021, 07:48 PM
Replies: 1
Views: 1,022
Posted By Niloofar
Ok - here's the reply I got from the developers,...

Ok - here's the reply I got from the developers, which solved the problem

Hi Niloofar,

Thank you for your reporting.
Could you download the SRA file (use fastq-dump program from SRAToolkit)...
Forum: Bioinformatics 08-07-2021, 04:37 AM
Replies: 1
Views: 1,022
Posted By Niloofar
Hisat2 output is empty

I run this command:

hisat2 -p 40 -q -x Ene_index --sra-acc SRR13696274 --al alignedRNA_1 -S alignment1

and the output says:
4249510 reads; of these:
4249510 (100.00%) were unpaired; of...
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