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Forum: De novo discovery 06-25-2009, 07:57 AM
Replies: 16
Views: 13,724
Posted By bioinfosm
If you scroll further down in the afg file, there...

If you scroll further down in the afg file, there are lines beginning with
src:
These are the read IDs contained in that contig. The ID comes from velvet's Sequences file.

Could you share how...
Forum: De novo discovery 06-22-2009, 06:55 AM
Replies: 16
Views: 13,724
Posted By bioinfosm
you may try the velvetg command with options...

you may try the velvetg command with options '-amos_file yes -read_trkg yes' that creates a velvet_asm.afg file that contains some of that information...
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