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Forum: Bioinformatics

10-04-2011, 03:13 AM

Replies: 17

DESeq problems

Views: 4,894

Posted By janec

Thanks, Kopi. I'm using it on a remote...

Thanks, Kopi.

I'm using it on a remote server so am waiting for one of our sysadmins to install the latest versions of R and DESeq - much googling revealed that using the developer version of R...

Forum: Bioinformatics

10-03-2011, 05:45 AM

Replies: 17

DESeq problems

Views: 4,894

Posted By janec

DESeq problems

I'm running DESeq for the first time and am having a few problems. I'm working through the documentation dated August 11, 2011.

I had no problems setting up a CountDataSet object with my counts...

Forum: Bioinformatics

07-07-2011, 02:42 AM

Replies: 0

Reads map in Tophat, but Cufflinks doesn't find transcripts

Views: 1,586

Posted By janec

Reads map in Tophat, but Cufflinks doesn't find transcripts

I'm trying to analyse some RNA-seq data for the first time. We are looking for novel non-coding transcripts that are expected to (mostly) be unspliced of low abundance.

With that in mind I've...

Showing results 1 to 3 of 3

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