SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 8 of 8
Search took 0.00 seconds.
Search: Posts Made By: menenuh
Forum: Bioinformatics 07-05-2011, 01:05 AM
Replies: 77
Views: 26,579
Posted By menenuh
casava 1.8

Hello,
I have been using this script with great ease and pleasure, till Casava 1.8 update. Now the read id structure is changed, the script no longer recognizes the pair information. Do you have an...
Forum: Bioinformatics 04-28-2011, 06:17 AM
Replies: 39
Views: 15,121
Posted By menenuh
couldn't run CNVnator

Hello,
Does anyone have experience with CNVnator?
It requires the ROOT package, and after two unsuccessful attempts I managed to install it finally. But now I'm having problems running it.
Am I...
Forum: Bioinformatics 01-10-2011, 02:53 AM
Replies: 1
Views: 1,881
Posted By menenuh
Hi mfischer, I have the same problem here. Did...

Hi mfischer,
I have the same problem here. Did you find an explanation?
Forum: Bioinformatics 12-03-2010, 12:11 AM
Replies: 8
Views: 9,212
Posted By menenuh
Hi Cog, I have also used sfffile command to...

Hi Cog,
I have also used sfffile command to split my reads before going to AVA, then bumped into same "No sample/reference data to align" error. I haven't tried to use the original sff in AVA, but...
Forum: Bioinformatics 12-02-2010, 07:46 AM
Replies: 8
Views: 9,212
Posted By menenuh
I have the same problem too. Any suggestions?

I have the same problem too. Any suggestions?
Forum: Bioinformatics 04-16-2010, 05:44 AM
Replies: 292
Views: 157,591
Posted By menenuh
non-unique reads

Hello,
In my sam file I have both unique and non-unique reads. What happens to non-unique reads when I call SNPs from the sam file? Are they included in the SNP calling process?

thanks
Forum: Bioinformatics 03-10-2010, 06:21 AM
Replies: 1
Views: 2,627
Posted By menenuh
"beginner in alignment" question

Hello,
I am analyzing Roche 454 sequence data. The sequencing was performed not for whole genome but for the exons of (around) 100 genes. When I first started analyzing, I used the target sequence...
Forum: Bioinformatics 01-28-2010, 05:17 AM
Replies: 1
Views: 4,541
Posted By menenuh
Alignment statistics from bwa?

Hello, I am a newbie and I have a question,
Is it possible to get alignment statistics from sam output of bwa algorithm? And also, what happens to unaligned reads? Are there also present in the...
Showing results 1 to 8 of 8

 


All times are GMT -8. The time now is 08:24 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO