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Search: Posts Made By: MatthewHaasUMN
Forum: General 11-16-2020, 12:55 PM
Replies: 0
Views: 2,215
Posted By MatthewHaasUMN
synonymous substitution rates from OrthoFinder orthogroups

Hi all,

I am trying to calculate synonymous substitution rates using orthogroups from OrthoFinder. I'm able to filter the orthogroups using regular expressions in Python, but I am still left with...
Forum: General 02-22-2015, 06:50 PM
Replies: 3
Views: 1,244
Posted By MatthewHaasUMN
Thanks for the response. I'm downloading the...

Thanks for the response.

I'm downloading the files from Galaxy, they are being stored by my institution. I don't think the files are corrupt, but it has occurred to me that the compressed file may...
Forum: General 02-22-2015, 02:31 PM
Replies: 3
Views: 1,244
Posted By MatthewHaasUMN
Unzipping TGZ file always halts

I'm using 7-zip to decompress/unzip my fastq files after downloading them to my machine, but it always halts at 68% (with an error that only names a single fastq file, but no further information...
Forum: RNA Sequencing 02-22-2015, 11:20 AM
Replies: 0
Views: 1,761
Posted By MatthewHaasUMN
Calculating expression count values for WGCNA

Hello all, I am trying to come up with a matrix of expression values for my samples to use in a weighted gene co-expression analysis (WGCNA), but am not sure what the best tool to use is. To date,...
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