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Search: Posts Made By: UpsetNotMad Scientist
Forum: Bioinformatics 10-29-2012, 08:51 AM
Replies: 15
Views: 29,544
Thanks for your help GenoMax! It is ~1400...

Thanks for your help GenoMax!

It is ~1400 runs. Here is an example: Click here (http://www.ebi.ac.uk/ena/data/view/SRP000918)

The folders are setup like this: SRP1\SRS1\SRX1\SRR1\SRA1.sra...
Forum: Bioinformatics 10-26-2012, 01:55 PM
Replies: 15
Views: 29,544
fastq-dump --split-files *.sra doesn't work for...

fastq-dump --split-files *.sra doesn't work for the same sra files even in the same directory let alone a directory of folder.

the decrypt.bin can decrypt all the files in a series of directories...
Forum: Bioinformatics 10-26-2012, 10:19 AM
Replies: 15
Views: 29,544
Yup, Service Pack 3 installed. I will just use...

Yup, Service Pack 3 installed. I will just use the 64-bit system, Windows 7, NTFS.
Forum: Bioinformatics 10-26-2012, 10:03 AM
Replies: 15
Views: 29,544
Smile Got it to work on a single SRA in Windows 7...

Got it to work on a single SRA in Windows 7 64-bit with 64 bit toolkit. :) I was previously using XP with 32-bit toolkit. Now how do I get it do this on a full study instead of a run where the sra...
Forum: Bioinformatics 10-26-2012, 09:31 AM
Replies: 15
Views: 29,544
Awesome. THANKS! Already more useful than any...

Awesome. THANKS! Already more useful than any guide online.

I unfortunately instantly get:

The procedure entry point GetErrorMode could not be located in the dynamic link library KERNEL32.dll. ...
Forum: Bioinformatics 10-25-2012, 02:33 PM
Replies: 15
Views: 29,544
fastq-dump for dummies

Can someone provide a dummies guide to fastq-dump? I mean a really dumb guide: download here, install here, open it by doing this, do this to an sra to output a fastq. Initially words would work but...
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