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Forum: Bioinformatics 01-21-2019, 08:21 PM
Replies: 0
Views: 395
Posted By fuellen
Trouble with Cyclin D3 in the Golub dataset

Dear ALL,

Many of you will be aware of the Golub et al data, one of the first
high-throughput gene expression datasets ever, used for teaching
in many places. I recently noticed that for one of...
Forum: Bioinformatics 11-16-2018, 06:30 PM
Replies: 0
Views: 502
Posted By fuellen
google/pubmed searches including all synonyms (that was possible at ihop)

Hello,
1) For a couple of weeks, ihop (http://www.ihop-net.org/), "Information Hyperlinked over Proteins" seems down, does anyone have details?
2) ihop offered to start pretty straightforward...
Forum: Bioinformatics 10-19-2018, 01:11 AM
Replies: 0
Views: 483
Posted By fuellen
Best way to obtain a keyword-guided overview of gene expression for a small gene set?

Hello,
I'm looking for a tool (best if it's easy to use over the web), where I
can provide a small set of genes (e.g. 10 HUGO gene names) and a keyword as input,
and the output is a table of...
Forum: General 08-03-2018, 12:57 AM
Replies: 0
Views: 1,886
Posted By fuellen
Need a pointer to a dataset with matching animal+human for two different tissues

Hello,
is anyone aware of publicly available data with at least 8 samples describing gene expression as follows, each time for 2 conditions, so that logFC can be calculated each time:
+ tissue1 for...
Forum: Bioinformatics 02-17-2018, 12:22 AM
Replies: 0
Views: 508
Posted By fuellen
are there any anti-coexpression databases?

Hello,
I'd like to know, for a set of tissues if possible, whether two genes
are anti-correlated (gene A up implying gene B down and vice versa),
in NGS datasets and, more generally, in any gene...
Forum: Sample Prep / Library Generation 02-01-2018, 09:23 PM
Replies: 2
Views: 1,105
Posted By fuellen
RNA Sequencing at doctor's office

Hello!
I'm looking for feasible scenarios that would enable gene expression data analyses at a doctor's office, probably based on a blood sample. It seems that sample processing is too sophisticated...
Forum: Oxford Nanopore 01-30-2018, 06:39 AM
Replies: 3
Views: 2,519
Posted By fuellen
Re: RNA Sequencing "at home", when will this be easy? Reply to Thread

Thanks a lot to kmcarr for the response!
How long does complete sample processing with RNAlater or something similar take, if done by the doctor/nurse?
(In some scenarios, I'd actually like to have...
Forum: Oxford Nanopore 01-29-2018, 10:16 PM
Replies: 3
Views: 2,519
Posted By fuellen
RNA Sequencing "at home", when will this be easy?

Hello,
When will RNA-sequencing (gene expression) easily be possible at home, or at
the doctor's office / point of care?
Right now, it seems that sample preparation is still too demanding, while...
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