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Forum: Bioinformatics 04-27-2013, 10:42 AM
Replies: 11
Views: 9,087
Posted By JonB
I don't remember exactly, but I think this...

I don't remember exactly, but I think this problem was because I ran out of memory. I haven't been running tophat locally since, but on a cluster with ~8 GB of memory I never have this problem.
Forum: Bioinformatics 09-04-2012, 05:34 AM
Replies: 11
Views: 9,087
Posted By JonB
I have about 23 GB of disk space left. I tried to...

I have about 23 GB of disk space left. I tried to monitor the disk space as the analysis was running and couldn't see if I ran out of space.
Forum: Bioinformatics 09-04-2012, 03:00 AM
Replies: 11
Views: 9,087
Posted By JonB
TopHat error: could not open writer pipe gzip

Hi,

I am running TopHat on my MacBook Air. Everything seemed to be running fine, but after maybe 30min of "Mapping left_kept_reads to genome" it stopped with this error message:

Error: could...
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