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Forum: General 09-28-2011, 07:40 AM
Replies: 5
Views: 6,539
Posted By robelb4
Not like that, it should be 3 lines at a time, as...

Not like that, it should be 3 lines at a time, as I said it above
Forum: General 09-27-2011, 11:21 PM
Replies: 5
Views: 6,539
Posted By robelb4
by the way the 2 files i put side by side is just...

by the way the 2 files i put side by side is just two show they're the same format.

thanks
Forum: General 09-27-2011, 11:20 PM
Replies: 5
Views: 6,539
Posted By robelb4
perl -reading from 2 files and merge them

Hi All,

I just want read 2 files and write their result (3 lines from each file at time) in another file, how do i do it in perl?? thanks

example:
file1.txt content ...
Forum: Bioinformatics 08-05-2011, 11:39 AM
Replies: 0
Views: 1,857
Posted By robelb4
SOAPdenovo -error

Hi All,

I'm testing SOAPdenovo assembler and whenever I tried to run the assembly i getting "segment fault" error message.

What do you think would be the cause ?

Thanks,

R
Forum: Bioinformatics 07-29-2011, 11:12 AM
Replies: 4
Views: 2,955
Posted By robelb4
Thanks a lot sklages, My problem was the the...

Thanks a lot sklages,

My problem was the the input file and got fix it, but the NFS issue you're right it may slower the process but still working

Robel
Forum: Bioinformatics 07-27-2011, 08:24 AM
Replies: 4
Views: 2,955
Posted By robelb4
Mira Error

Hello all,

I'm using Mira assembler for the illumina pe reads. I followed all the procedure for the denovo assembly but I'm getting an error (please see the some part of the log file ).

What...
Forum: Bioinformatics 07-21-2011, 06:57 AM
Replies: 2
Views: 2,563
Posted By robelb4
gaffa, Thanks, that's what I thought and...

gaffa,

Thanks, that's what I thought and tried, but it's i'm getting a 'No such file ..' error . May be I misplaced the reads directory.

now I know the command is correct.

thanks
Robel
Forum: Bioinformatics 07-21-2011, 06:23 AM
Replies: 2
Views: 2,563
Posted By robelb4
Mira assembly -shell script

hello,

I'm a beginner in Assembly and shell scripting. My question is I already have pair-end reads generated using solexa. and on the MIRA documentation about mira input file processing...
Forum: Bioinformatics 07-19-2011, 08:29 AM
Replies: 3
Views: 4,063
Posted By robelb4
themerlin, Thanks

themerlin,

Thanks
Forum: Bioinformatics 07-15-2011, 11:42 AM
Replies: 3
Views: 4,063
Posted By robelb4
Using MIRA assembler for illumina sequence

Hello,
I'm trying to use ,MIRA assembler on a small data which is sequenced using illumina. But the instruction on the MIRA manual is for mapping using another file as a backbone.
Is any one...
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