Forum: Bioinformatics
10-16-2012, 07:51 AM
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Replies: 0
Views: 1,811
Calculate core and Pan genome of bacteria
Hey all,
can sombody tell me how to go pull out the core genome and pan genomes between different strains of bacteria? Are there any tools to do this? i have read about bi directional blast being...
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Forum: Bioinformatics
10-11-2012, 09:23 PM
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Replies: 4
Views: 1,592
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Forum: Bioinformatics
10-11-2012, 06:21 AM
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Replies: 4
Views: 1,592
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Forum: Bioinformatics
10-11-2012, 12:12 AM
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Replies: 4
Views: 1,592
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Forum: Metagenomics
08-19-2012, 10:26 PM
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Replies: 3
Views: 3,847
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Forum: Metagenomics
08-13-2012, 01:40 AM
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Replies: 3
Views: 3,847
Tool to identify 16s rRNA fragments in raw data
Hello,
I have metagenome data samples in FASTA format downloaded from EBI and CAMERA. I wanted to extract 16s rRNA fragments from this FASTA file. Can anybody tell me how exactly to go about doing...
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Forum: Bioinformatics
04-21-2012, 11:46 AM
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Replies: 8
Views: 2,677
Thank you for the TRF link,
In an earlier...
Thank you for the TRF link,
In an earlier post you had mentioned that you did have a tool to find reads in nextgen alignment but may not work for 454, would it be possible for me to use the tool...
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Forum: Bioinformatics
04-21-2012, 11:30 AM
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Replies: 8
Views: 2,677
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Forum: Bioinformatics
04-21-2012, 10:59 AM
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Replies: 8
Views: 2,677
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Forum: Bioinformatics
04-21-2012, 07:35 AM
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Replies: 8
Views: 2,677
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Forum: Bioinformatics
04-13-2012, 07:46 AM
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Replies: 3
Views: 1,340
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Forum: Bioinformatics
04-13-2012, 07:23 AM
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Replies: 3
Views: 1,340
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