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Forum: RNA Sequencing 09-25-2014, 08:27 PM
Replies: 2
Views: 3,249
Posted By daikon
gffread merge_matt_tissue_MSU/merged.gtf -g...

gffread merge_matt_tissue_MSU/merged.gtf -g Oryza_sativa.IRGSP-1.0.21.dna_sm.genome.fa -w test.fa

for example.

The fasta genome file is in the same directory- you have to supply the full path...
Forum: RNA Sequencing 08-14-2014, 04:51 PM
Replies: 2
Views: 3,249
Posted By daikon
Question gffread to output sequence, gene_id not output

HI everyone,

Many apologies if I'm duplicating, I have searched the forums, google, can't find the specific answer.

So- I've performed my mRNAseq experiment, used the workflow:
...
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