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Forum: General 03-30-2019, 02:59 AM
Replies: 1
Views: 5,079
Posted By jgroh
I'm wondering whether you ended up finding a...

I'm wondering whether you ended up finding a solution, why this error is generated? I am experiencing the same issue after a first pass at using GMAP to align a transcriptome assembly to a reference...
Forum: Bioinformatics 03-27-2019, 10:41 PM
Replies: 52
Views: 22,373
Posted By jgroh
Does gapfiller create problems for downstream alignment

Hello,

I'm interested in using GapFiller, however I am wondering whether this might cause issues for downstream alignment. In particular, if the original assembly contigs comprise close to the...
Forum: General 02-12-2019, 05:44 PM
Replies: 4
Views: 4,075
Posted By jgroh
trimming BGI adapters

Hello,

I have paired-end 100bp reads generated from BGI-seq 500. The sequencing center did some adapter removal trimming before delivering the data but there appears to be a fraction of reads...
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