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Forum: Bioinformatics 01-20-2013, 10:40 AM
Replies: 2
Views: 2,901
Posted By allnovels
VarScan early halt

Hi,

I'm new to VarScan. I was trying to call copynumber from my exome sequencing data.

My script is
samtools mpileup -q 1 -f ~/hg19.fa normal.rmdup.bam tumor.rmdup.bam | java -Xmx4g -jar...
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