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Forum: Bioinformatics 04-04-2016, 10:12 AM
Replies: 46
Views: 21,958
Posted By balaena
40 cores Intel(R) Xeon(R) CPU E7- 8860 @ 2.27GHz...

40 cores Intel(R) Xeon(R) CPU E7- 8860 @ 2.27GHz

1TB Ram

Dataset: 2x 75 million 125bp reads

Thanks!
Forum: Bioinformatics 04-04-2016, 10:03 AM
Replies: 46
Views: 21,958
Posted By balaena
Sorry. No change.

Sorry. No change.
Forum: Bioinformatics 04-04-2016, 09:44 AM
Replies: 46
Views: 21,958
Posted By balaena
Hi Thanks for the suggestion, but it didn't...

Hi

Thanks for the suggestion, but it didn't help. The load goes through the ceiling. I used it like so:

bbnorm.sh -Xmx100g in= in2= out= out2= target=200 mindepth=3 threads=4 pigz=f unpigz=f
...
Forum: Bioinformatics 04-04-2016, 08:43 AM
Replies: 46
Views: 21,958
Posted By balaena
Hi Brian I have difficulties to control the...

Hi Brian

I have difficulties to control the load of bbnorm on our server. Regardless which number I enter for threads=, it will always completely use all idle cores and the load average eventually...
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