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Forum: Clinical Sequencing 09-26-2016, 03:47 AM
Replies: 1
Views: 5,782
Posted By VC87
This would be very usefull for me...unfortunately...

This would be very usefull for me...unfortunately i an't afford it.How can i leran how to interpretate th scatter plots from MethyPipe?thanks in advance
Forum: Bioinformatics 06-07-2016, 05:34 AM
Replies: 8
Views: 2,522
Posted By VC87
Smile Thank you both dpryan and genomax!I think i...

Thank you both dpryan and genomax!I think i undrstood both of your answers
Forum: Bioinformatics 06-06-2016, 06:12 AM
Replies: 8
Views: 2,522
Posted By VC87
Hi everyone! I am new to NGS analysis, so...

Hi everyone!
I am new to NGS analysis, so there are a couple of things i don't understand very well.One is the per base sequence content plot of FASTQC. Here it is shown the percenatge of each...
Forum: Illumina/Solexa 05-30-2016, 07:05 AM
Replies: 145
Views: 317,021
Posted By VC87
Smile Thanks Brian, i will definitely have a look at...

Thanks Brian, i will definitely have a look at BBDuk!:)
Forum: Illumina/Solexa 05-27-2016, 12:18 PM
Replies: 145
Views: 317,021
Posted By VC87
Hi everyone! Does anyone knows if/how is ir...

Hi everyone!
Does anyone knows if/how is ir possible to distinguish kmer plots in FASTQC of reads derived from RRBS librarys from reads that just have bad quality?thanks in advance
Forum: Bioinformatics 03-08-2016, 07:33 AM
Replies: 3
Views: 803
Posted By VC87
For example, i have this run number: ERR363542...

For example, i have this run number: ERR363542 .How do I find the associated resspectiv gsm number?
Forum: Bioinformatics 03-08-2016, 06:55 AM
Replies: 3
Views: 803
Posted By VC87
How to find the gsm number from a read mumber

Hello everyone!Can anyone tell me how to find (if possible) the gsm number associated to a read number?thanks in advance!
Forum: Bioinformatics 03-02-2016, 07:35 AM
Replies: 649
Views: 180,870
Posted By VC87
Hi!Can anyone explain to me the differences...

Hi!Can anyone explain to me the differences between bisulfite-seq, WGBS, RRBS and COBRA library reads?thanks in advance!
Forum: Bioinformatics 03-02-2016, 04:03 AM
Replies: 2
Views: 1,645
Posted By VC87
Thank you for your reply!

Thank you for your reply!
Forum: Bioinformatics 03-02-2016, 03:44 AM
Replies: 2
Views: 1,645
Posted By VC87
Unhappy Differences between BED, WIG CEL and SRA

Hello!can anyone explain to me the differences between BED, WIG CEL and SRA files?thanks in advance!
Forum: Bioinformatics 11-03-2015, 12:38 PM
Replies: 15
Views: 10,427
Posted By VC87
Thanks again.By the way, do you know if it is...

Thanks again.By the way, do you know if it is possible to convert wig to fasta (or SRA)?
Forum: Bioinformatics 11-02-2015, 01:15 PM
Replies: 15
Views: 10,427
Posted By VC87
SRA, for now

SRA, for now
Forum: Bioinformatics 11-02-2015, 12:12 PM
Replies: 15
Views: 10,427
Posted By VC87
Does anyone know how to get the raw SRA files...

Does anyone know how to get the raw SRA files associated with the samples that we can search in the browser from the epigenomics database of NCBI? i suppose it should be possible to gte them from the...
Forum: Bioinformatics 10-28-2015, 02:42 AM
Replies: 15
Views: 10,427
Posted By VC87
Genomax thanks for your reply!i'll check that out...

Genomax thanks for your reply!i'll check that out :)
Forum: RNA Sequencing 10-27-2015, 03:27 PM
Replies: 2
Views: 2,564
Posted By VC87
hi!does anyone knows how to search sra files from...

hi!does anyone knows how to search sra files from Bs seq library fixing metadata features such as organism, tissue, age etc..?thanks
Forum: Bioinformatics 10-27-2015, 03:19 PM
Replies: 15
Views: 10,427
Posted By VC87
Yes i have.I want to search all SRA files from...

Yes i have.I want to search all SRA files from Bisulfite seq library fixing certain features such as organism, tissue, age, sex etc..thanks anyway for your reply!
Forum: Bioinformatics 10-27-2015, 02:07 PM
Replies: 15
Views: 10,427
Posted By VC87
Hi!can someonde tell me how can i search SRA...

Hi!can someonde tell me how can i search SRA files trouhgh metadata features (wether in GEO, ENA..)?thanks in advance!
Forum: Bioinformatics 10-08-2015, 03:00 PM
Replies: 13
Views: 8,732
Posted By VC87
Hi everyone, i'm new here! Can someone tell-me...

Hi everyone, i'm new here!
Can someone tell-me if it's possible to cenvert a WIG file type to FASTQ?thanks in advance
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