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Forum: Bioinformatics 02-15-2020, 05:27 AM
Replies: 0
Views: 603
Posted By zgene
GATK Germline CNV caller

Hi everyone,

I was wondering if anyone has experience working with GATK Germline CNV caller?
I am recently trying to work with this program and progressed until the DetermineGermlineContigPloidy...
Forum: Bioinformatics 10-05-2016, 01:42 AM
Replies: 4
Views: 3,306
Posted By zgene
Dear All, I am a newbie in ChIP-seq analysis...

Dear All,

I am a newbie in ChIP-seq analysis and now I am trying to assess these values using "phantompeakqualtools", but unfortunately I got an error and cant find any similar posts for that....
Forum: Epigenetics 06-14-2016, 12:41 PM
Replies: 3
Views: 2,843
Posted By zgene
Dear nucacidhunter, Thanks for the reply. ...

Dear nucacidhunter,

Thanks for the reply.
Marker was loaded in all the wells.
I did not attach the Input traces there, there was only a gel photo for that.
The Input traces are now attached...
Forum: Epigenetics 06-13-2016, 12:16 PM
Replies: 3
Views: 2,843
Posted By zgene
Bioanalyzer for ChIPed DNA

Dear All,
I have a question regarding bioanalyzer for ChIPed DNA.
When I do bioanalyzer for the input DNA, I get peaks at the proper range in bioanalyzer.
But, for the immunoprecipitated samples,...
Forum: Epigenetics 03-03-2016, 01:16 PM
Replies: 22
Views: 9,980
Posted By zgene
Hi everyone. I am a new one in ChIP-seq and...

Hi everyone.
I am a new one in ChIP-seq and planning to do it for a poorly characterized TF.
We are going to do ChIP on transfected HEK293 cells with WT and 2 other mutant forms of our specific...
Forum: Clinical Sequencing 07-21-2015, 09:53 AM
Replies: 1
Views: 5,034
Posted By zgene
Incidental findings according to ACMG recommendation

Dear All,

I have a question about how to report incidental findings in exome samples for the clinical diagnostic purposes.
I have read the ACMG recommendations for reporting incidental findings...
Forum: Bioinformatics 12-15-2012, 05:36 AM
Replies: 1
Views: 2,902
Posted By zgene
Segmentation fault (core dumped)-BWA indexing ref genome

Dear All,

I am working with program: bwa (alignment via Burrows-Wheeler transformation),Version: 0.6.2

The OS and its version is Linux Linux-Pc.LabDomain.com 3.3.4-5.fc17.i686.PAE #1 SMP Mon...
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