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Forum: Bioinformatics 01-30-2016, 05:47 AM
Replies: 7
Views: 2,566
Posted By proux
thanks. 50 bp reads is the only input accepted in...

thanks. 50 bp reads is the only input accepted in the galaxy version. It is not explicitly stated in the R package, but it is what they used in the paper for their own data, and they truncated 1000...
Forum: Bioinformatics 01-29-2016, 09:03 AM
Replies: 7
Views: 2,566
Posted By proux
i guess this should allow at least the split into...

i guess this should allow at least the split into single ended
http://bedtools.readthedocs.org/en/latest/content/tools/bamtofastq.html
Forum: Bioinformatics 01-29-2016, 08:45 AM
Replies: 7
Views: 2,566
Posted By proux
This is my first post, and I have the same...

This is my first post, and I have the same question - although the tool I have in mind is the newer qDNAseq, but it seems to also want single end 50bp reads....
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