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Forum: Wiki Discussion 10-26-2013, 05:05 AM
Replies: 12
Views: 22,981
Posted By lpantano
Hi, I wrote down some tips to add/edit...

Hi,

I wrote down some tips to add/edit tools. They are on help pages.

I think that it would be good to have a link in red colour, or anything that catch attention on the following pages that I...
Forum: Wiki Discussion 10-01-2013, 11:23 PM
Replies: 12
Views: 22,981
Posted By lpantano
Good! I will work in a draft and then send...

Good!

I will work in a draft and then send it to you. This way you can suggest/comment, this will help a lot.

About ISMB, we need to send a proposal by Nov 22. Again, I can start with a draft...
Forum: Wiki Discussion 10-01-2013, 03:57 AM
Replies: 12
Views: 22,981
Posted By lpantano
Hi, sorry about the silence. I have been...

Hi,

sorry about the silence. I have been travel during these two months and thinking how to get people involve in this.

I have some ideas but one I think that could be done right now.

any...
Forum: Wiki Discussion 07-31-2013, 01:06 AM
Replies: 12
Views: 22,981
Posted By lpantano
You can call me Lorena. Thanks for the...

You can call me Lorena.

Thanks for the information.

It would be great to have all term that are not in EDAM, adn modigy those. How can we do that?
Once I have those terms I can start changing...
Forum: Wiki Discussion 07-30-2013, 02:34 AM
Replies: 12
Views: 22,981
Posted By lpantano
Hi, thanks for the reply! I can be...

Hi,

thanks for the reply!

I can be actively involved. I think that there is wonderfull information here.

One thing that I don't know if there is information about how to fill the form when...
Forum: Wiki Discussion 07-20-2013, 03:57 AM
Replies: 12
Views: 22,981
Posted By lpantano
planning for tool database?

Hi,

I just wanted to know if there is any project with a team that it is involved in the improvement of the wiki software page?

I think that it was more than a great idea to start that, and It...
Forum: RNA Sequencing 10-31-2012, 12:38 PM
Replies: 0
Views: 1,212
Posted By lpantano
how tophat2 selects paired reads alignment

Hi,

I was wondering how tophat2 selects the best hits for paired read data.

If u have read1 mapping to location1 perfectly, and read2 to a location1+inner side but with one mismatch. And also...
Forum: RNA Sequencing 09-09-2011, 02:43 AM
Replies: 0
Views: 1,035
Posted By lpantano
MRNA structure and degradation

Hi, I have been told about a paper dealing with highthroughput sequencing data indicating that mRNA degradation fragments peak at regions corresponding to stem structures of the mRNAs. Do you know...
Forum: General 07-21-2011, 08:33 AM
Replies: 0
Views: 1,091
Posted By lpantano
looking for RNA degraded data

Hello,

I was wondering if some of you have RNA degraded data that has been sequencing with illumina, and of course if I can use to plot the gene enrichment regions.

Thanks a lot
Forum: General 07-20-2011, 07:52 AM
Replies: 1
Views: 971
Posted By lpantano
RNA quality

Hi,

I have a RNA sample that shows this RNA pattern in bioanalizer:

876

The image is not so good, but enough (I hope). It is clear that the amount of RNA is low, but do you think that...
Forum: Bioinformatics 02-02-2010, 02:34 AM
Replies: 2
Views: 1,700
Posted By lpantano
Smile clustering short reads

Hello, and sorry if in some other thread is the answer. But I would like to cluster short reads from solexa technology. These reads are from 15 nt to 26 nt long. Do you now some program that does...
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