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Forum: Bioinformatics 06-26-2008, 05:20 PM
Replies: 236
Views: 586,990
Posted By green tree
Correct me if I am wrong, but I think that...

Correct me if I am wrong, but I think that ssahaSNP is more tuned for ABI *Sanger* reads and not ABI SOLiD reads. For shorter reads, you can use ssaha2 (it even has a preconfigured option for Solexa)...
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