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Forum: Academic/Non-Profit Jobs 01-14-2016, 09:29 PM
Replies: 0
Views: 1,991
Posted By mtmorgan
R / Bioconductor core team Senior Programmer / Analyst

The Bioconductor ( team has an opening available for a Senior Progammer / Analyst (
Forum: Bioinformatics 02-11-2014, 01:16 PM
Replies: 4
Views: 6,122
Posted By mtmorgan
These lines /usr/bin/ld: cannot find...

These lines

/usr/bin/ld: cannot find -llapack
/usr/bin/ld: cannot find -lblas
/usr/bin/ld: cannot find -lgfortran

indicate that more-or-less standard libraries liblapack, libblas,...
Forum: Bioinformatics 03-07-2013, 12:06 PM
Replies: 1
Views: 2,153
Posted By mtmorgan
Just to install a package and its...


to install a package and its dependencies; it looks like you have a version mismatch in your session -- installing the wrong version of Gviz for your version of R. Might as well ask...
Forum: Bioinformatics 11-26-2012, 09:34 AM
Replies: 1
Views: 1,446
Posted By mtmorgan
Use the Rsamtools library, readBamGappedAlignment...

Use the Rsamtools library, readBamGappedAlignment or more directly scanBam. Use the 'what' argument of ScanBamParam() to specify what aspects of the bam file you want to read in. Ask on the...
Forum: Bioinformatics 06-11-2011, 03:22 PM
Replies: 10
Views: 4,269
Posted By mtmorgan
R / Bioconductor ( has...

R / Bioconductor ( has flexible tools in the ShortRead, Biostrings, and GenomicRanges packages. Some relevant functions include readFastq, writeFastq, SRFilter,...
Forum: Events / Conferences 05-05-2011, 10:17 AM
Replies: 0
Views: 1,703
Posted By mtmorgan
BioC2011 -- Where Software and Biology Connect, Seattle July 27, 28, 29

Join us in Seattle July 27 (Developer Day), 28 and 29 for the annual R / Bioconductor conference ( 'Where Software and Biology Connect'. The conference...
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