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Forum: Bioinformatics 09-08-2013, 05:28 PM
Replies: 41
Views: 16,554
Posted By wangxj
I have the same question as below. Can...

I have the same question as below.

Can anyone answer those questions?

very appreciate:confused:
Forum: Bioinformatics 03-18-2013, 06:50 PM
Replies: 5
Views: 4,464
Posted By wangxj
I have the same problem.I found that different...

I have the same problem.I found that different expression gene from I is more than II,and include II.
My cuffdiff version is 2.0.2.
Forum: RNA Sequencing 10-30-2012, 06:43 PM
Replies: 26
Views: 26,009
Posted By wangxj
Hi Davis, Is edgeR suit for the Data with...

Hi Davis,

Is edgeR suit for the Data with bio replicates?
Forum: Bioinformatics 10-09-2012, 05:50 PM
Replies: 4
Views: 11,986
Posted By wangxj
Hello, I have a question: how can you count the...

Hello,
I have a question: how can you count the number of reads that mapped to each transcript? Now i have the bam file from the Tophat.

thanks
Forum: Bioinformatics 10-09-2012, 05:48 PM
Replies: 1
Views: 1,613
Posted By wangxj
Hello, I have the same question:which method...

Hello,

I have the same question:which method should i choose?
Forum: RNA Sequencing 09-17-2012, 11:47 PM
Replies: 0
Views: 923
Posted By wangxj
gff3 to refFlat

Hi all,

I have tryed the convert-tools form UCSC (link: http://hgdownload.cse.ucsc.edu/admin...gff3ToGenePred). But It seems, the tools did not work. My input file is ITAG2.3_cdna_alignments.gff3...
Forum: Bioinformatics 09-17-2012, 11:43 PM
Replies: 0
Views: 1,313
Posted By wangxj
gff3 to refFlat

Hi all,

I have tryed the convert-tools form UCSC (link: http://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/gff3ToGenePred). But It seems, the tools did not work. My input file is...
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