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Forum: RNA Sequencing 05-31-2016, 09:41 AM
Replies: 0
Views: 1,354
Posted By elsoja
Question: Cufflinks displaying "WARNING: Multi-Hit not found"

I'm running Cufflinks (2.2.1) on a set of RNA-seq alignments that I did with STAR. I'm using these options:

/home/user1/Data/Softwares/cufflinks-2.2.1/cufflinks -p 6 -u -o...
Forum: RNA Sequencing 04-29-2016, 05:55 AM
Replies: 1
Views: 1,317
Posted By elsoja
Transforming stranded RNA-Seq libraries in unstranded

I want to detect differential gene expression by comparing two different RNA-Seq libraries, however one of them is stranded and the other one is unstranded. I know that unstranded libraries overrate...
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