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Search: Posts Made By: chutfilz
Forum: Bioinformatics 01-25-2019, 11:38 AM
Replies: 678
Views: 184,114
Posted By chutfilz
No dice, same error. dm3.fa is a file under...

No dice, same error.

dm3.fa is a file under the subdirectory "WholeGenomeFasta" in the file set downloaded from iGenomes (https://support.illumina.com/sequencing/sequencing_software/igenome.html)....
Forum: Bioinformatics 01-24-2019, 01:03 PM
Replies: 678
Views: 184,114
Posted By chutfilz
Wow! Thanks for the fast reply. I've pared down...

Wow! Thanks for the fast reply. I've pared down my job to just one set of directly-called, paired files to eliminate the possibility of a malfunctioning $i.

bbmap.sh...
Forum: Bioinformatics 01-24-2019, 12:36 PM
Replies: 678
Views: 184,114
Posted By chutfilz
Negative Array Size in BBMap

Hello,

I'm trying to map 16 paired sequences. I've already trimmed the adapters using trimgalore!

Input (scheduled job run on a server):

for i in "${samples[@]}"; do
bbmap.sh...
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