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Search: Posts Made By: Phage Hunter
Forum: Bioinformatics 06-14-2015, 10:58 AM
Replies: 3
Views: 1,297
Posted By Phage Hunter
Hi awork, Yes, I found that using Geneious,...

Hi awork,

Yes, I found that using Geneious, a commercially available assembler solves most of my problems.

Geneious is good at assembling circular genomes and does this with my terminal...
Forum: Bioinformatics 02-13-2015, 12:06 AM
Replies: 3
Views: 1,297
Posted By Phage Hunter
Genome assembly with direct terminal repeats

Hi guys,

I'm having a bit of a problem with respect to viral genome assembly from my illumina data. Some of the genomes possess direct terminal repeats (DTRs) and this is causing all the assembly...
Forum: Bioinformatics 01-14-2015, 04:34 AM
Replies: 5
Views: 2,192
Posted By Phage Hunter
The problem has been sorted out. It was simply...

The problem has been sorted out. It was simply because my main drive name has a space in it and the script was unable to locate the path because of it. I changed it and things are working now.
...
Forum: Bioinformatics 01-14-2015, 04:21 AM
Replies: 5
Views: 2,192
Posted By Phage Hunter
No I did not move or edit anything. After...

No I did not move or edit anything. After decompressing, I simply tried to run the program immediately from the script.
Forum: Bioinformatics 01-14-2015, 03:43 AM
Replies: 5
Views: 2,192
Posted By Phage Hunter
I am running Ubuntu 14.04 with Java version...

I am running Ubuntu 14.04 with Java version 1.8.0_25. I have tried multiple commands and each produces the same error. I tried running: ./bbmap.sh ref=T3.fasta k=10

With that command I get the...
Forum: Bioinformatics 01-14-2015, 02:35 AM
Replies: 5
Views: 2,192
Posted By Phage Hunter
BBMap Error

Hi guys,

When attempting to build an index or carry out any mapping with BBMap I always get the following error: Could not find or load main class Drive. I suspect this is may be purely a Java...
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