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Forum: Bioinformatics 02-02-2018, 11:12 AM
Replies: 0
Views: 622
Posted By nextgen2010
bcftools fixref command

I am using the basic fixref command in bcftools to swap reference and alternate alleles:

bcftools +fixref broken.bcf -Ob -o fixref.bcf -- -d -f /path/to/reference.fasta -i All_20151104.vcf.gz
...
Forum: Bioinformatics 03-01-2017, 11:43 AM
Replies: 0
Views: 750
Posted By nextgen2010
Help Installing VCFTools

I'm just trying to install vcftools and I keep getting stuck. I am totally inexperienced with command line and where to store files, etc so I really need help.

I did exactly what the documentation...
Forum: Bioinformatics 12-14-2015, 09:53 AM
Replies: 0
Views: 755
Posted By nextgen2010
Plink

I have never used command line before and I am trying to use PLINK for the first time. I'm playing around with data they give you in the article "Data quality control in genetic case-control...
Forum: Illumina/Solexa 01-11-2011, 08:05 AM
Replies: 3
Views: 2,309
Posted By nextgen2010
approximately 40%

approximately 40%
Forum: General 10-01-2010, 09:01 AM
Replies: 1
Views: 1,574
Posted By nextgen2010
whoa you posted at 3:33 am. creepy!

whoa you posted at 3:33 am. creepy!
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