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Forum: Bioinformatics 07-25-2014, 02:17 PM
Replies: 1
Views: 1,514
Posted By zhixiang
pennCNV error "FATAL ERROR:EmGenderCelListener::fillInContrastValues() "

I use pennCNV to process the CEL files from affymetrix 6 SNP.

When I run the first step "apt-probeset-genotype", it works for most of the cel files, but for some cel files, the program exited...
Forum: Bioinformatics 11-08-2013, 11:12 AM
Replies: 4
Views: 5,855
Posted By zhixiang
Hi dkoboldt, Can filterfp.pl be used to...

Hi dkoboldt,

Can filterfp.pl be used to filter the somatic indels?

Can I combine the indel vcf and snp vcf from the output of varscan somatic, and then filter the vcf file using step 1 and...
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