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Forum: Bioinformatics 10-26-2012, 02:43 AM
Replies: 3
Views: 2,768
Posted By lisann_5
fastq file without index?

Dear All,

I have a fastq file which failed to align with bowtie. The error message is: reads file does not look like a FASTQ file. I don't know what is going wrong. Is it possible that there is no...
Forum: Bioinformatics 10-25-2012, 05:24 AM
Replies: 4
Views: 2,772
Posted By lisann_5
Thanks!

Thank you all for the replay. I found my solution for this problem by maasha!
Forum: Bioinformatics 10-25-2012, 01:27 AM
Replies: 4
Views: 2,772
Posted By lisann_5
manipulate sequences in Fastq files

Dear All,

I have 20x illumina sequences data in large fastq files. Each file contains a sequence length of 21 nucleotides. I would like to remove the first 4 nucleotides from all reads in the...
Forum: Bioinformatics 01-12-2012, 11:35 PM
Replies: 11
Views: 10,604
Posted By lisann_5
Thanks peromhc, I downloaded boost-1.44.0 and...

Thanks peromhc, I downloaded boost-1.44.0 and that works for me!
Forum: Bioinformatics 01-11-2012, 12:49 AM
Replies: 11
Views: 10,604
Posted By lisann_5
You are right peromhc, it is an very old version....

You are right peromhc, it is an very old version. I don't see that when i downloaded cufflinks. By downloading cufflinks 1.3 I create the same error as you before. How did you solve that?

Thanks!
Forum: Bioinformatics 01-10-2012, 06:31 AM
Replies: 11
Views: 10,604
Posted By lisann_5
error: invalid conversion from ‘const char*’ to ‘char*’

Dear All,

I want to use cufflinks to analyze RNA-seq Data. Therefore I first installed Boost_1_48_0.tar.gz and built it with this code:

tar -zxf boost_1_48_0.tar.gz
cd boost_1_48_0
...
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