SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 9 of 9
Search took 0.00 seconds.
Search: Posts Made By: visse226
Forum: General 12-22-2016, 07:04 AM
Replies: 3
Views: 2,447
Posted By visse226
If I do this though I get an error that the range...

If I do this though I get an error that the range function does not take keywords as arguments. Not sure how to solve this yet
Forum: General 12-22-2016, 03:50 AM
Replies: 3
Views: 2,447
Posted By visse226
I will try this soon, definitely!. It always...

I will try this soon, definitely!. It always looks so simple in the end but writing it yourself is still a struggle when you've only just started figuring out coding. Thank you so much I might come...
Forum: General 12-19-2016, 05:30 AM
Replies: 3
Views: 2,447
Posted By visse226
Talking Add 'missing' lines of data by using python code

So I am a beginner when it comes to programming and python and such. But I think I have a very simple question.

I have large tab-delimited files that for example contain lines like this:

10000...
Forum: General 11-24-2016, 01:58 AM
Replies: 0
Views: 2,071
Posted By visse226
Post Can I use tabix on vcf.gz files?

As a beginner I might have a stupid question, but I have several VCF files of different individuals that are zipped ( .vcf.gz). I want to merge these files into one VCF file containing all...
Forum: Bioinformatics 11-09-2016, 12:35 AM
Replies: 1
Views: 1,456
Posted By visse226
By the way: I know that in plink 1.07 I will have...

By the way: I know that in plink 1.07 I will have to change the flag into --homozyg-window-snp 1000
(I hope this is correct indeed), but I want to know what I can do if I want to do it in 1.9 and...
Forum: Bioinformatics 11-09-2016, 12:28 AM
Replies: 1
Views: 1,456
Posted By visse226
Exclamation Error in plink: --homozyg-window-kb flag provisionally retired

Hi all,

I am really new to bioinformatics and tools such as PLINK.

I am running commands on plink data created from whole genome information. I use PLINK to search for runs of homozygosity.
...
Forum: Introductions 11-04-2016, 01:13 AM
Replies: 4
Views: 1,375
Posted By visse226
Thank you so much! Very helpful :)

Thank you so much! Very helpful :)
Forum: Introductions 11-01-2016, 05:11 AM
Replies: 4
Views: 1,375
Posted By visse226
Hi, Thanks for quick response! So that means...

Hi, Thanks for quick response!

So that means with the pipe I would be doing it correctly? Or redirection operator?
I am new to all this, so I am not aware what the difference between the two is...
Forum: Introductions 11-01-2016, 03:55 AM
Replies: 4
Views: 1,375
Posted By visse226
Question VCFtools whole genome data zipped

Hi all!
New here, introduction: I investigate inbreeding in an endangered species where I have whole genome data of several individuals and variants stored in VCF files.

I want to keep the file...
Showing results 1 to 9 of 9

 


All times are GMT -8. The time now is 02:00 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO