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Forum: Bioinformatics 10-05-2016, 04:59 PM
Replies: 0
Views: 980
Posted By luc
How do aligners deal with ambiguous bases?


I would be interested to know how do aligners for HT sequencing data (BBmap, Bowtie, BWA-mem, .. etc.) deal with ambiguous bases?

Are they able to ignore the position of an N in the...
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