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Search: Posts Made By: sekhwal
Forum: Bioinformatics 09-26-2015, 09:55 AM
Replies: 50
Views: 15,159
Posted By sekhwal
I know, but this is not answer of my query. Is...

I know, but this is not answer of my query. Is that suggestion platform or sharing knowledge? thanks for your every time suggestion.
Forum: Bioinformatics 09-25-2015, 12:53 PM
Replies: 50
Views: 15,159
Posted By sekhwal
Is seems script correct? I have data in my files,...

Is seems script correct? I have data in my files, however it is showing ..

Warning: [tblastn] Query is Empty!
Forum: Bioinformatics 09-25-2015, 08:45 AM
Replies: 1
Views: 689
Posted By sekhwal
Bedtools question

I am new with bedtools..So I have a perl script to compare three file in overlap manner, however my script is not perfectly improved to compare such thing.
I need to compare file 1 to 2, file 1 to 3...
Forum: Bioinformatics 09-25-2015, 08:16 AM
Replies: 50
Views: 15,159
Posted By sekhwal
I have no spaces in my files...I have masking nuc...

I have no spaces in my files...I have masking nuc genome seq and multiple fasta proteins seq for tblastn..
the script making two empty files dna.blast and pep.blast
Forum: Bioinformatics 09-25-2015, 07:58 AM
Replies: 50
Views: 15,159
Posted By sekhwal
Thanks... now, I got the PATH issue, and blast...

Thanks...
now, I got the PATH issue, and blast is running, However after sometimes running it shows following errors..

Warning: [tblastn] Query is Empty!

cat:...
Forum: Bioinformatics 09-24-2015, 01:47 PM
Replies: 50
Views: 15,159
Posted By sekhwal
speed up tblastn query

Hi I am using following script to speed up my query at tblastn, hence it is showing error....

Can't exec "makeblastdb": No such file or directory at blast.pl line 41, <GEN0> line 42132.
Forum: Bioinformatics 09-24-2015, 01:35 PM
Replies: 50
Views: 15,159
Posted By sekhwal
blast+ programs

I am at the same path where blast+ programs are there. Can see my path following

/Downloads/bp272/ncbi-blast-2.2.31+/bin$ perl blast.pl tblastn /home/sekhwalm/Oryza/blast/ e-5 6...
Forum: Bioinformatics 09-24-2015, 01:16 PM
Replies: 50
Views: 15,159
Posted By sekhwal
blast+ programs

I copied all blast+ programs in same directory, where my input files are, still it is showing same error.
Forum: Bioinformatics 09-24-2015, 01:09 PM
Replies: 50
Views: 15,159
Posted By sekhwal
I am using following script to speed up my query...

I am using following script to speed up my query at tblastn, hence it is showing following error...

Can't exec "makeblastdb": No such file or directory at blast.pl line 42, <GEN0> line 42132.
...
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