SEQanswers

Go Back   SEQanswers > Search Forums


Showing results 1 to 6 of 6
Search took 0.00 seconds.
Search: Posts Made By: jflowers002
Forum: Bioinformatics 05-27-2015, 05:27 PM
Replies: 1
Views: 3,092
Posted By jflowers002
Multi-threaded Velvet

I thought I followed the correct make commands to make velvet multi-threaded, but I have been running an assemble on an EC2 server for the past 5 days on 500 Mbp of total sequence, and I have never...
Forum: Bioinformatics 12-02-2014, 10:28 AM
Replies: 1
Views: 900
Posted By jflowers002
Orthomcl in the Cloud?

Does anyone know if there Orthomcl is deployed in a cloud System? I have looked for it in the JCVI Biolinux Cloud listing and it is not there. Thanks.
Forum: Bioinformatics 10-31-2013, 11:55 AM
Replies: 3
Views: 2,688
Posted By jflowers002
Well, I will answer my own question. One...

Well, I will answer my own question. One inherent issue that i believe caused this trouble was my blast parameters. I had 100 genomes and I only allowed 250 hits since I was concerned about...
Forum: Bioinformatics 10-28-2013, 09:16 PM
Replies: 3
Views: 2,688
Posted By jflowers002
Trouble with Orthomcl Clusters

I recently did analysis on over 100 genomes within the same phylum using Orthomcl. Sadly, once I finally got the results a couple of weeks later, I discovered that several clusters appeared to have...
Forum: Bioinformatics 08-26-2013, 07:14 AM
Replies: 3
Views: 2,496
Posted By jflowers002
Solved

Thanks for the reply. I forgot to re-run the InstallSchema script after having to uninstall and then re-install Mysql to deal with issues with that installation.

Thanks again!
Forum: Bioinformatics 08-21-2013, 02:54 PM
Replies: 3
Views: 2,496
Posted By jflowers002
Orthomcl problems

I am trying to run Orthomcl, but when I try the first step to load the blast results into mysql (orthomclLoadBlast), I get the following error:

DBD::mysql::st execute failed: Table...
Showing results 1 to 6 of 6

 


All times are GMT -8. The time now is 05:59 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO