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Search: Posts Made By: RudyS
Forum: Bioinformatics 04-01-2009, 05:42 AM
Replies: 236
Views: 585,967
Posted By RudyS
xuer the browser is well documented ... suggest...

xuer
the browser is well documented ... suggest you write to the nice folks on the listserver there

genome@soe.ucsc.edu

Rudy
Forum: Bioinformatics 03-14-2009, 08:49 AM
Replies: 236
Views: 585,967
Posted By RudyS
thanks swbarnes2 i think i will post a query...

thanks swbarnes2

i think i will post a query on the UCSC listserver
genome@soe.ucsc.edu
and see if someone like Jim Kent is thinking about some utility that could facilitate reference assembly...
Forum: Bioinformatics 03-12-2009, 07:22 PM
Replies: 236
Views: 585,967
Posted By RudyS
swbarnes are you saying that there is some...

swbarnes

are you saying that there is some utility in the UCSC Genome Browser for assembling genomes from short reads? havent heard about that ...

RudyS
Forum: Bioinformatics 03-12-2009, 10:46 AM
Replies: 236
Views: 585,967
Posted By RudyS
Staden GAP5

i note that there is no active link in the posting

* STADEN - Includes GAP4. GAP5 once completed will handle next-gen sequencing data. A partially implemented test version is available here
...
Forum: Bioinformatics 01-23-2009, 01:10 PM
Replies: 236
Views: 585,967
Posted By RudyS
likewise there is no download available on the...

likewise there is no download available on the main page
http://www.broad.mit.edu/science/programs/genome-biology/computational-rd/computational-research-and-development

though they state that it...
Forum: Bioinformatics 07-07-2008, 04:37 PM
Replies: 236
Views: 585,967
Posted By RudyS
STADEN - Includes GAP4. GAP5 once completed will handle next-gen sequencing data.

anybody have scoops on possible software upgrade (GAP5?) for Staden package?

hoping :)
rudy
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