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Forum: Bioinformatics 08-07-2008, 01:41 PM
Replies: 236
Views: 585,967
Posted By lh3
I do not know more that you, apfejes. I just...

I do not know more that you, apfejes. I just wonder why they do not release the program when the benchmark is ready. This might be the best time for "short" read aligners. In a year time (probably...
Forum: Bioinformatics 08-07-2008, 01:00 PM
Replies: 236
Views: 585,967
Posted By lh3
Another good program: ZOOM! Zillions of oligos...

Another good program: ZOOM! Zillions of oligos mapped, which is online now at Bioinformatics. ZOOM resembles Eland a lot, but it further improves the spaced-seed method. I think SOLiD read mapper...
Forum: Bioinformatics 03-06-2008, 02:21 AM
Replies: 236
Views: 585,967
Posted By lh3
As we could imagine, this list of programs will...

As we could imagine, this list of programs will grow very fast. And here are more:

Euler-SR (Euler-Short Reads Assembly, http://euler-assembler.ucsd.edu/portal/) by Mark J. Chaisson and Pavel A....
Forum: Bioinformatics 02-04-2008, 08:22 AM
Replies: 236
Views: 585,967
Posted By lh3
Thank you very much for the awesome post! Just a...

Thank you very much for the awesome post! Just a few comments.

1. In a commercial package, NCGR uses GMAP (http://www.gene.com/share/gmap/) to alignment Solexa reads. GMAP is free, though.

2....
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